Protein Family Alignment Annotation Tool

PFAAT Alignment snippet - graphic size 3kb

Pfaat is a Java application that allows one to edit, analyze, and annotate multiple sequence alignments. The annotation features are a key component as they provide a framework to for further sequence, structure and statistical analysis. Further details are provided in the documentation below.

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Technical Questions:Daniel Caffrey
Project Membership: Enoch Huang

Pfaat was written by Neogenesis Drug Discovery under contract for Pfizer Research Technology Center (RTC). Additional features and bug-fixes were implemented by members of PFAAT project team. The authors credit Michele Clamp's Jalview for inspiring the look and feel of Pfaat's multiple alignment editor and the Sean Eddy lab for the use of the ATV/FORESTER code. The authors also thank their colleagues Qing Cao, Alan Cheng, Giles Day, Jeff Carlson, Patricia Soulard, and Scott Wildmann for their help and support of the Pfaat project.

Copyright © 2002 Neogenesis Drug Discovery and Pfizer, Inc.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

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Updated July 18 2007 by Daniel Caffrey